Glycerate dehydrogenase: Difference between revisions

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{{enzyme
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| Name = histidinol dehydrogenase
| EC_number = 1.1.1.23
| CAS_number = 9028-27-7
| IUBMB_EC_number = 1/1/1/23
| GO_code = 0004399
| image =
| width =
| caption =
}}
{{Infobox protein family
| Symbol = Histidinol_dh
| Name = Histidinol dehydrogenase
| image = PDB 1k75 EBI.jpg
| width =
| caption = the l-histidinol dehydrogenase (hisd) structure implicates domain swapping and gene duplication.
| Pfam = PF00815
| Pfam_clan = CL0099
| InterPro = IPR012131
| SMART =
| PROSITE = PDOC00534
| MEROPS =
| SCOP = 1k75
| TCDB =
| OPM family =
| OPM protein =
| CAZy =
| CDD =
}}
In [[enzymology]], a '''histidinol dehydrogenase''' (HIS4) (HDH) ({{EC number|1.1.1.23}}) is an [[enzyme]] that [[catalysis|catalyzes]] the [[chemical reaction]]
 
:L-histidinol + 2 NAD<sup>+</sup> <math>\rightleftharpoons</math> L-histidine + 2 NADH + 2 H<sup>+</sup>
 
Thus, the two [[substrate (biochemistry)|substrates]] of this enzyme are [[L-histidinol]] and [[nicotinamide adenine dinucleotide|NAD<sup>+</sup>]], whereas its 3 [[product (chemistry)|products]] are [[L-histidine]], [[nicotinamide adenine dinucleotide|NADH]], and [[hydrogen ion|H<sup>+</sup>]].
 
This enzyme belongs to the family of [[oxidoreductase]]s, specifically those acting on the CH-OH group of donor with NAD<sup>+</sup> or NADP<sup>+</sup> as acceptor. The systematic name of this enzyme class is '''L-histidinol:NAD<sup>+</sup> oxidoreductase'''. This enzyme is also called '''L-histidinol dehydrogenase'''.
 
Histidinol dehydrogenase [[Catalysis|catalyzes]] the terminal step in the [[biosynthesis]] of [[histidine]] in [[bacteria]], [[fungi]], and [[plants]], the four-[[electron]] [[redox|oxidation]] of L-histidinol to histidine.
 
In 4-electron dehydrogenases, a single [[active site]] [[catalysis|catalyses]] 2 separate [[oxidation]] steps: oxidation of the [[Enzyme substrate|substrate]] [[alcohol]] to an [[reaction intermediate|intermediate]] [[aldehyde]]; and oxidation of the aldehyde to the [[product (chemistry)|product]] acid, in this case His.<ref name="pmid3533140">{{cite journal | author = Grubmeyer CT, Gray WR | title = A cysteine residue (cysteine-116) in the histidinol binding site of histidinol dehydrogenase | journal = Biochemistry | volume = 25 | issue = 17 | pages = 4778–84 |date=August 1986 | pmid = 3533140 | doi = 10.1021/bi00365a009| url = }}</ref> The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD [[molecule]]s.<ref name="pmid3533140">{{cite journal | author = Grubmeyer CT, Gray WR | title = A cysteine residue (cysteine-116) in the histidinol binding site of histidinol dehydrogenase | journal = Biochemistry | volume = 25 | issue = 17 | pages = 4778–84 |date=August 1986 | pmid = 3533140 | doi = 10.1021/bi00365a009| url = }}</ref> By contrast with most [[dehydrogenases]], the [[Substrate (biochemistry)|substrate]] is bound before the [[Nicotinamide adenine dinucleotide|NAD]] [[coenzyme]].<ref name="pmid3533140">{{cite journal | author = Grubmeyer CT, Gray WR | title = A cysteine residue (cysteine-116) in the histidinol binding site of histidinol dehydrogenase | journal = Biochemistry | volume = 25 | issue = 17 | pages = 4778–84 |date=August 1986 | pmid = 3533140 | doi = 10.1021/bi00365a009| url = }}</ref> A [[Cysteine|Cys]] residue has been implicated in the catalytic mechanism of the second oxidative step.<ref name="pmid3533140">{{cite journal | author = Grubmeyer CT, Gray WR | title = A cysteine residue (cysteine-116) in the histidinol binding site of histidinol dehydrogenase | journal = Biochemistry | volume = 25 | issue = 17 | pages = 4778–84 |date=August 1986 | pmid = 3533140 | doi = 10.1021/bi00365a009| url = }}</ref>
 
In bacteria HDH is a single chain polypeptide; in [[fungus|fungi]] it is the C-terminal [[protein domain|domain]] of a multifunctional [[enzyme]] which [[catalyse]]s three different steps of histidine biosynthesis; and in [[plants]] it is [[gene expression|expressed]] as a [[cell nucleus|nuclear]] encoded [[protein]] [[Protein precursor|precursor]] which is exported to the [[chloroplast]].<ref name="pmid2034659">{{cite journal | author = Nagai A, Ward E, Beck J, Tada S, Chang JY, Scheidegger A, Ryals J | title = Structural and functional conservation of histidinol dehydrogenase between plants and microbes | journal = Proc. Natl. Acad. Sci. U.S.A. | volume = 88 | issue = 10 | pages = 4133–7 |date=May 1991 | pmid = 2034659 | pmc = 51612 | doi = 10.1073/pnas.88.10.4133| url = }}</ref><ref name="pmid15299582">{{cite journal | author = Cowan-Jacob SW, Rahuel J, Nagai A, Iwasaki G, Ohta D | title = Crystallization and preliminary crystallographic analysis of cabbage histidinol dehydrogenase | journal = Acta Crystallogr. D Biol. Crystallogr. | volume = 52 | issue = Pt 6 | pages = 1188–90 |date=November 1996 | pmid = 15299582 | doi = 10.1107/S0907444996008396 | url = }}</ref><ref name="pmid11842181">{{cite journal | author = Barbosa JA, Sivaraman J, Li Y, Larocque R, Matte A, Schrag JD, Cygler M | title = Mechanism of action and NAD<sup>+</sup>-binding mode revealed by the crystal structure of L-histidinol dehydrogenase | journal = Proc. Natl. Acad. Sci. U.S.A. | volume = 99 | issue = 4 | pages = 1859–64 |date=February 2002 | pmid = 11842181 | pmc = 122284 | doi = 10.1073/pnas.022476199 | url = }}</ref>
 
==Structural studies==
 
As of late 2007, 4 [[tertiary structure|structures]] have been solved for this class of enzymes, with [[Protein Data Bank|PDB]] accession codes {{PDB link|1K75}}, {{PDB link|1KAE}}, {{PDB link|1KAH}}, and {{PDB link|1KAR}}.
 
==References==
{{reflist|1}}
 
==Further reading==
* {{cite journal | author = Adams E | year = 1954 | title = Enzymatic synthesis of histidine from histidinol | journal = J. Biol. Chem. | volume = 209 | pages = 829&ndash;846 | pmid=13192138 | issue = 2}}
* {{cite journal | author = Adams E | year = 1955 | title = L-Histidinal, a biosynthetic precursor of histidine | journal = J. Biol. Chem. | volume = 217 | pages = 325&ndash;344 | pmid=13271397 | issue = 1}}
* {{cite journal | author = Yourno J, Ino I | year = 1968 | title = Purification and crystallization of histidinol dehydrogenase from ''Salmonella typhimurium'' LT-2 | journal = J. Biol. Chem. | volume = 243 | pages = 3273&ndash;6 | pmid = 4872177 | issue = 12 }}
* {{cite journal | author = Loper JC | year = 1968 | title = Histidinol dehydrogenase from ''Salmonella typhimurium'' Crystallization and composition studies | journal = J. Biol. Chem. | volume = 243 | pages = 3264&ndash;72 | pmid = 4872176 | issue = 12 }}
 
{{InterPro content|IPR012131}}
 
[[Category:Protein families]]
[[Category:EC 1.1.1]]
[[Category:NADH-dependent enzymes]]
[[Category:Enzymes of known structure]]
 
{{1.1.1-enzyme-stub}}

Latest revision as of 18:21, 6 December 2014

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