Strongly measurable functions: Difference between revisions

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The Yoshimine
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sort<ref>M. Yoshimine, The use of direct access devices in problems requiring the reordering of long lists of data, report RJ-555, IBM Research Laboratory, San Jose, California, 1969.
</ref>
is an algorithm that is used in [[quantum chemistry]]
to order lists of two electron repulsion integrals. It is implemented in the IBM Alchemy program
suite <ref>A.D. McLean, M. Yoshimine, B.H. Lengsfield, P.S. Bagus, B. Liu:
ALCHEMY II, A Research Tool for Molecular Electronic Structure and Interactions,
in: Modern Techniques in Computational Chemistry (MOTECC-91),
(E. Clementi, ed.) ESCOM Science Publishers Leiden, 1991, ISBN 90-72199-10-3</ref>
and in the UK R-matrix package for electron and positron scattering by molecules
<ref>
L.A. Morgan, J. Tennyson and C.J. Gillan,
The UK molecular R-matrix codes,
Computer Physics Communications,
Volume 114, Issues 1-3, November 1998, Pages 120-128
</ref>
which is based on the early versions of the IBM Alchemy program suite.
 
== Use of basis set expansions in quantum chemistry ==
In [[quantum chemistry]], it is common practice to represent one electron functions in terms of an
expansion over a basis set, <math>\chi_i</math>. The most common choice for this basis set is [[Gaussian orbitals]] (GTOs) however for linear molecules [[Slater orbitals]] (STOs) can be
used.
<ref>A. D. McLean and M. Yoshimine, 
      Computation of Molecular Properties and Structure,
      IBM Journal of Research and Development, Volume 12, Number 3, May, 1968
      pages 206--233
</ref>
 
The Schrödinger equation, for a system with two or more electrons, includes the Coulomb repulsion
operator. In the basis set expansion approach this leads to the requirement to compute two electron
repulsion integrals involving four basis functions. Any given basis set may be ordered so that
each function can assigned a unique index. So, for any given basis set, each two electron
integral can be described by four indices, that is the indices of the four basis functions involved.
It is customary to denote these indices as p,q,r and s and the integral as (pq|rs). Assuming that
<math>\chi_i</math> are real functions, the (pq|rs) are defined by
 
:<math>
            (pq|rs) = \int\int \frac{ \chi_p( \mathbf{r}_1 ) \;
                                      \chi_q( \mathbf{r}_1 ) \;
                                      \chi_r( \mathbf{r}_2 ) \;
                                      \chi_s( \mathbf{r}_2 ) \;
                                    }
                                    {
                                      \mid \mathbf{r}_1  - \mathbf{r}_2 \mid
                                    }
                                    \;\; d\mathbf{r}_1 \; d\mathbf{r}_2
</math>
 
The number of two electron integrals that must be computed for any basis set depends on the
number of functions in the basis set and on the symmetry [[point group]] of the molecule being studied.
 
=== Permutational symmetry of the indices ===
The computed two electron integrals are real numbers, <math>(pq|rs)\in\mathbb{R}</math>,  
and this implies certain permutational symmetry properties on the indices p,q,r
and s.<ref>
    D.F. Brailsford and G.G. Hall,
    ''Symmetry Properties of One- and Two-Electron Molecular Integrals''
    International journal of Quantum Chemistry, Volume V, 657–668 (1971)
</ref> The exact details depend on whether the part of the basis function representing angular
behavior is real or complex. For [[Gaussian orbitals]] real spherical harmonics are
generally used whereas for [[Slater orbitals]] the complex spherical harmonics are used.
 
In the case of real orbitals, p can be swapped with q without changing the integral value,
or independently r with s. in addition pq as a pair can be swapped with rs as a pair without
changing the integral. Putting these interchanges together means that
:
:<math>
\begin{matrix}
(pq|rs) = & (qp|rs) \\
          & (pq|sr) \\
          & (qp|sr) \\
          & (rs|pq) \\
          & (sr|pq) \\
          & (rs|qp) \\
          & (sr|qp)
\end{matrix}
</math>
:
which is eightfold symmetry. If the molecule has no spatial symmetry, in other words it
belongs to the <math>C_1</math> point group which has only one irreducible representation,
then the permutational symmetry of the integrals indices is the only operation
which can be applied. On the other hand, if the molecule has some symmetry operations,
then further ordering is possible. The impact of the above symmetry relationship is that
an integral can be computed once, but corresponds to eight different index combinations.
 
=== Point group symmetry of the system ===
The Schrödinger Hamiltonian commutes with the operations of the point symmetry group of the
nuclear framework of the molecule. This means that a two electron integral can be non-zero
only if the product of the four functions transforms, or contains a component which transforms,
as the totally symmetric irreducible representation of the symmetry [[point group]] to which the
molecule belongs.
 
This means that a computer program for two electron integral processing can precompute the
list of basis function symmetry combinations (''symmetry blocks'') for which integrals may
be non zero and ignore all other symmetry combinations. The list of symmetry blocks can
also be ordered. Frequently, the totally symmetric irreducible representation is assigned
the lowest index in the list, typically 1 in [[Fortran]] or 0 in the C programming language.
Within any given symmetry block, the permutational symmetry of the integrals still
applies and the integrals can be ordered within that block. For example if the
molecule belongs to the <math>C_2</math> point group, which has irreducible representations
<math>A</math> and <math>B</math> then integral blocks for the following symmetry combinations
are non-zero
:<math>
\begin{matrix}
          ( \; A \; A \; | \; A \; A \; ) \\
          ( \; B \; B \; | \; B \; B \; ) \\
          ( \; A \; A \; | \; B \; B \; ) \\
          ( \; A \; B \; | \; A \; B \; ) \\
\end{matrix}
</math>
and integrals blocks for any other symmetry combination are identically zero
by group theory. Thus two types of ordering can be used:
 
* the non-zero symmetry blocks of two electron ingtegrals are ordered (the programmer is at liberty to define this order) the dimension of each block can be computed since the number of basis functions of each symmetry is known.
* within each non-zero block, integrals are ordered according to the above symmetry of indices.
 
This means that given the four indices pqrs defining a two electron integral, a unique index may be computed.
This is the essence of the Yoshimine procedure.
 
== Yoshimine's sorting procedure ==
When the integrals are computed by the integrals program they are written out to a sequential
file along with the p,q,r,s indices which define them. The order in which the integrals are
computed is defined by the algorithm used in the integration program. The most efficient
algorithms do not compute the integrals in order, that is such that the p,q,r and s indices
are ordered.
 
This would not be a problem is all of the integrals could be held in CPU memory simultaneously.
In that case the computed integral can be assigned into its position in the array of
two electron integrals by computing the required index from the p,q,r and s indices.
In the 1960s it was essentially impossible to hold all of the two electron integrals in
memory simultaneously. Therefore, M Yoshimine therefore developed a sorting algorithm for
two-electron integrals which reads the unordered list of integrals from a files and transforms
it into an ordered list which is then written to another file. A by-product of this is that the file
storing the ordered integrals does not need to contain the p,q,r,s indices for each integral.
The ordering process uses a direct access file but the input and output files of integrals
are sequential.
 
At the start of the 21st century, computer memory is much larger and for small molecules
and/or small basis sets it is sometimes possible to hold all two electron integrals in memory.
In general however, the Yoshimine algorithm is still required.
 
==References==
{{reflist|3}}
 
{{DEFAULTSORT:Yoshimine sort}}
[[Category:Quantum chemistry]]
 
[[fr:Fonction d'état de configuration]]

Latest revision as of 09:09, 26 September 2014

Never artificially weaken the counter arguments in order to make your arguments strong. Most companies offer their services online, thus you will easily find these services by just surfing the Internet. In writing College Application Essay, the students may also tell about themselves that will capture the attention of the readers. We strive to be a world essay writing company through providing quality services at a price which is equivalent with our services. After jotting down all the points they should be elaborated throughout the content.

For now you need to understand exactly what the question is asking you. , officially abbreviated PSP) is a handheld game console manufactured and marketed by Sony Corporation Development of the console was announced during E3 2003, and it was unveiled on May 11, 2004, at a Sony press conference before E3 2004. Even the last moment suggestions of the students are not ignored. Colleges can ask many kinds of short questions and writing supplements will differ. In case you loved this post and you would love to receive more information relating to do my essay me uk assure visit our own site. The main idea of your whole essay will be your thesis statement.

There are various purposes for these challenges, incorporating poor writing aptitudes, deficient looking capacities, incorporation of insignificant material, poor organizing and arranging, and inadequate time also. It is good to have a lot of pertinent quotes in a final draft, but keep in mind that no more than 10-15% of your written research paper should consist of quotations. An essay can compare similarities and differences between two or more books, movies, or events. Confidentiality is an important factor to consider before you can pay for professional essays, because it is essential to your integrity in the academic realm. The best part starts when Huck dresses up as a girl and goes in the town to find what's going on.

Our well qualified and experienced staff will assist you in writing a high quality research paper. Most often students really become good at writing essays when they reach the end of their school careers. However, essay writing helps improve the students understanding on a particular topic. Consequently, we suggest you to apply Exclusive-Essays. This is the first step to know whether they are trustworthy or not.

We do not let our customers down in front of their teachers by providing fake work. So remember, to gain top marks for your poetry essays, simply split the poem up into these chunks and they will allow you to write a clear, incisive and comprehensive essay every time. The writers are comfortable working with any of the academic writing style you need. Our work is to help students in writing legitimate philosophy essays and other academic papers at any time. Another important aspect is to keep your words brief and not deviate from the subject matter at hand.